diff options
Diffstat (limited to 'src/benchmarks/raxmlng.py')
| -rw-r--r-- | src/benchmarks/raxmlng.py | 29 |
1 files changed, 15 insertions, 14 deletions
diff --git a/src/benchmarks/raxmlng.py b/src/benchmarks/raxmlng.py index 05a6ca7..228c220 100644 --- a/src/benchmarks/raxmlng.py +++ b/src/benchmarks/raxmlng.py @@ -18,11 +18,10 @@ import os import re -import sys -from urllib.request import urlretrieve from src.artifact import GitArtifact from src.benchmark import Benchmark +import src.plots as plt from src.util import print_info, run_cmd RUNTIME_RE = re.compile("Elapsed time: (?P<runtime>(\\d*.\\d*)) seconds") @@ -58,8 +57,8 @@ class BenchmarkRaxmlng(Benchmark): os.makedirs(raxmlng_builddir, exist_ok=True) # building raxml-ng - run_cmd( ["cmake", ".."], cwd=raxmlng_builddir) - run_cmd( ["make"], cwd=raxmlng_builddir) + run_cmd(["cmake", ".."], cwd=raxmlng_builddir) + run_cmd(["make"], cwd=raxmlng_builddir) # create symlinks for exe in ["raxml-ng"]: @@ -83,19 +82,21 @@ class BenchmarkRaxmlng(Benchmark): result["runtime"] = RUNTIME_RE.search(stdout).group("runtime") def summary(self): - self.barplot_single_arg("{runtime}", - ylabel='"runtime in s"', - title='"raxml-ng tree inference benchmark"', - filepostfix="runtime") + plt.barplot_single_arg(self, + "{runtime}", + ylabel='"runtime in s"', + title='"raxml-ng tree inference benchmark"', + filepostfix="runtime") - self.export_stats_to_dataref("runtime") + plt.export_stats_to_dataref(self, "runtime") - self.barplot_single_arg("{VmHWM}", - ylabel='"VmHWM in KB"', - title='"raxml-ng memusage"', - filepostfix="memusage") + plt.barplot_single_arg(self, + "{VmHWM}", + ylabel='"VmHWM in KB"', + title='"raxml-ng memusage"', + filepostfix="memusage") - self.export_stats_to_dataref("VmHWM") + plt.export_stats_to_dataref(self, "VmHWM") raxmlng = BenchmarkRaxmlng() |