diff options
| author | Florian Fischer <florian.fl.fischer@fau.de> | 2017-02-12 11:37:12 +0100 |
|---|---|---|
| committer | Florian Fischer <florian.fl.fischer@fau.de> | 2017-02-12 11:37:12 +0100 |
| commit | 9f137b36348c7be576159929773fbc270d3be97e (patch) | |
| tree | 5bcb2aefcec0f95441d058b79391febe5990f88e | |
| parent | e1a0134d8f0f0da30859ecfdb19aca9c9837c8b7 (diff) | |
| download | rcheatsheet-9f137b36348c7be576159929773fbc270d3be97e.tar.gz rcheatsheet-9f137b36348c7be576159929773fbc270d3be97e.zip | |
add Sequenz Alignment
| -rw-r--r-- | rcheatsheet.md | 7 |
1 files changed, 5 insertions, 2 deletions
diff --git a/rcheatsheet.md b/rcheatsheet.md index e0bcf12..fcc1d15 100644 --- a/rcheatsheet.md +++ b/rcheatsheet.md @@ -74,8 +74,11 @@ | Befehl | Bedeutung | | --- | --- | -| <c r></c> | | - +| <c r>readAAStringSet("Pfad/zu/Datei.fasta")</c> | Liest Sequenz aus Datei | +| <c r>nchar(s)</c> | Liefert die Länge einer Sequenz | +| <c r>pairwiseAlignment(seq1,seq2,substitutionMatrix=BLOSUM62,gapOpening=3,gapExtension=1)</c> | Liefert ein globales Alignment für seq1 und seq2 | +| <c r>compareStrings(alignment)</c> | Stellt das Alignment graphisch dar | +| <c r>nchar(alignment)</c> | Liefert die Länge des optimalen Alignment | <!--- damit pandoc syntax highlighting benutzt --> ```c++ ``` |